BIO.002-08-Karakterisasi variasi

DAFTAR ACUAN
Basha, S.D. & M. Sujahta. 2007. Inter and intra-population variability of
Jatropha curcas (L.) characterized by RAPD and ISSR markers and
development of population-specific SCAR markers. Euphytica 156:
375--386.
Chen, J.J., P.S. Devanand, D.J. Norman, R.J. Henny, & C.T. Chao. 2004.
Genetic relationships of Aglaonema species and cultivars inferred from
AFLP markers. Annals of Botany 93: 157--166.
Cullis, C.A. 2004. Plant genomics and proteomics. John Wiley & Sons, Inc.
New Jersey: xiv + 214 hlm.
de Padua, L.S., N. Bunyapraphatsara, & R.H.M.J. Lemmens. 1999. Plant
resources of south east asia no 12 (1), medicinal and poisonous plants
1. Prosea, Bogor: 711 hlm.
Dieffenbach, C.W., T.M. J.Lowe, & G.S. Dveksler. 1993. General concepts for
PCR primer design. PCR Methods Application 3: 30--37.
Djogo, T. 2006. Jarak Pagar: Harapan dan kenyataan. 27 Agustus: 1 hlm.
http://infront.or.id/?pro=menu&id=16&arsip=29, 14 April 2007, pk.
14.47.
Felsenstein, J. 1985. Confidence limitson phylogenies: An approach using
bootstrap. Evolution 39(4): 783--791.
51
Karakterisasi Variasi..., Andreas Agustian, FMIPA UI, 2008
52
Griffiths, A.J.F., J.H. Miller, D.T. Suzuki, R.C. Lewontin, & W.M. Gelbrat.
2000. An introduction to genetic analysis. 7th ed. W. H. Freeman, New
York: xvii + 860 hlm.
Gubitz, G.M., M. Mittelbach, & M. Trabi. 1999. Exploitation of the tropical oil
seed plant Jatropha curcas L. Bioresource Technology 67: 73--82.
Hall, B.G. 2004. Phylogenetic trees made easy: A how to manual. 2nd ed.
Sinauer Associates, Inc., Sunderland: xiii + 221 hlm.
Hambali, E.A. Suryani, Dadang, Hariyadi, H. Hanafie, I.K. Reksowardoyo, M.
Rivai, M. Ihsanur, P. Suryadarma, S. Tjitrosemito, T.H. Soerawidjaja,
T. Prawitasari, T. Prakoso, & W. Purnama. 2006. Jarak pagar tanaman
penghasil biodiesel. Penebar Swadaya, Depok: 147 hlm.
Hariyadi. 2005. Budidaya tanaman jarak (Jatropha curcas) sebagai sumber
bahan alternatif biofuel. 17 Oktober: 1 hlm.
http://www.ristek.go.id/index.php?mod=News&conf=v&id=968. 25 Juni
2007. pk. 17.38.
Harlt, D.L. & E.W. Jones. 1998. Genetics principle and analysis. 4th ed.
Jones and Bartlett Publishing, Sudbury: xxiv + 843 hlm.
Haryati, T., T. Herawan, S. Supriyadi, & P.M. Naibaho. 1993. Biodiesel dari
minyak nabati sebagai bahan bakar alternatif. Berita Pusat Penelitian
Kelapa Sawit 1(1): 65--73.
Heller, J. 1996. Physic nut. Jatropha curcas L. promoting the conservation
and use of underutilized and neglected crops. International Plant
Genetic Resources Institute: 1--66.
Karakterisasi Variasi..., Andreas Agustian, FMIPA UI, 2008
53
Hofman, V. 2003. Biodiesel fuel. Februari: 1 hlm.
http://www.ag.ndsu.edu/pubs/ageng/machine/ae1240w.htm. 5
November 2007. pk. 21.40.
Howell, S.A. & J.A. Weber. 2008. Biodiesel definition. (?): 1 hlm.
http://www.biodiesel.org/resources/definitions/default.shtm. 28 Mei
2008. pk. 11.00.
Indrawan, M., R.B. Primack, & J. Supriatna. 2007. Biologi Konservasi. rev.ed.
Yayasan Obor Indonesia, Jakarta: xviii + 626 hlm.
Invitrogen. 2003. AFLP® Analysis system I, AFLP® starter primer kit.
Invitrogen, Carlsbad: i + 18 hlm.
Kaushik, N., K. Kumar, S. Kumar, N. Kaushik, & S. Roy. 2007. Genetic
variability and divergence studies in seed traits and oil content of
Jatropha (Jatropha curcas L.) accessions. Biomass and Bioenergy 31:
497--502.
Krizman, M., J. Jakse, D. Baricevic, B. Javornik, & M. Prosek. 2006. Robust
CTAB activated charcoal protocol for plant DNA extraction. Acta
agriculture Slovenica 87(2): 427--433.
Lawrence, G.H.M. 1963. Taxonomy of vascular plants. The MacMillan
Company, New York: xiii + 823 hlm.
Loh, J.P., R. Kiew, A. Kee, L.H. Gan, & Y.Y. Gan. 1999. Amplified fragment
length polymorphism (AFLP) provides molecular markers for the
identification of Caladium bicolor cultivars. Annals of Botany 84: 155-161.
Karakterisasi Variasi..., Andreas Agustian, FMIPA UI, 2008
54
Loh, J.P., R. Kiew, A. Hay, A. Kee, L.H. Gan, & Y.Y. Gan. 2000. Intergeneric
and interspecific relationships in Araceae tribe Caladieae and
development of molecular markers using amplified fragment length
polymorphism (AFLP). Annals of Botany 85: 371--378.
Manubens, A., S. Lobos, Y. Jadue, M. Toro, R. Messina, M. Lladser, & D.
Seelenfreund. 1999. DNA isolation and AFLP fingerprinting of
nectarine and peach varieties (Prunus persica). Plant Molecular
Biology Reporter 17: 255--267.
Mathius, N.T., Z. Lalu, Soedarsono, & H. Aswidinnoor. 2002. Keragaman
genetik klon-klon karet (Hevea brasiliensis Muell. Arg) yang resisten
dan rentan terhadap Corynespora casiicola berdasarkan penanda
RAPD dan AFLP. Menara Perkebunan 70(2): 35--49.
Mba, C. & J. Tohme. 2005. Use of AFLP markers in surveys of plant diversity.
Methods in enzymology 395: 177--201.
Mertens, T.R. & R.L. Hammersmith. 1995. Genetics laboratory investigation.
10th ed. Prentice-Hall, Englewood Cliffs: viii + 277 hlm.
Mian, M.A.R., J.C. Zwonitzer, Y. Chen, M.C. Saha, & A.A. Hopkins. 2005.
AFLP diversity within and among hardinggrass populations. Crop
Science 45: 2591--2597.
Miesfeld R.L. 2001. Nucleid acid biochemistry. 23 Agustus: 1 hlm.
http://www.biochem.arizona.edu/classes/bioc471/pages/Lecture2/Lect
Lec2.html. 27 Mei 2008. pk. 19.19.
Karakterisasi Variasi..., Andreas Agustian, FMIPA UI, 2008
55
Moore, D.D. & D. Dowhan. 2002. Preparation and analysis of DNA. Dalam:
Ausubel, F.M., R. Brent, R.E. Kingston, D.D Moore, J.G. Seidman, J.A.
Smith & K. Struhl. 1995. Current protocol in molecular biology. Vol I.
John Wiley & Sons, Inc., (?): xxiv + 9.17.3 hlm.
Mueller, U.G. & L.L. Wolfenbarger. 1999. AFLP genotyping and fingerprinting.
Elsevier Science 14: 389--394.
Omoto, C.K. & P.F. Lurquin. 2004. Genes and DNA: A beginners guide’s to
genetics and its application. Columbia University Press, New York: xviii
+ 217 hlm.
Pant, K.S., V. Khosla, D. Kumar, & S. Gairola. 2006. Seed oil content
variation in Jatropha curcas L. in different altitudinal ranges and sites
conditions in H.P. India. Lyonia 11(2): 31--34.
Polanski, A. & M. Kimmel. 2007. Bioinformatics. Springer, Berlin: xvii + 376
hlm.
Promega. 2005. Silver sequenceTM DNA sequencing system. Promega,
Madison: 24 hlm.
Raven, P.H. & G.B. Johnson. 2001. Biology. 6th ed. William C. Brown
Publisher, Dubuque: 1238 hlm.
Restrepo, S., M. Duque, J. Tohme, & V. Verdier. 1999. AFLP fingerprinting:
an efficient technique for detecting genetic variation of Xanthomonas
axonopodis pv. Manihotis. Microbiology 145: 107--114.
Karakterisasi Variasi..., Andreas Agustian, FMIPA UI, 2008
56
Roy, A., N. Frascaria, J. MacKay, & J. Bousquet. 1992. Segregating random
amplified polymorphic DNAs (RAPDs) in Betula alleghaniensis.
Theoretical and Applied Genetics 85: 173--180.
Saitou, N. 1995. Methods for building phylogenetic trees of genes and
species. Molecular biology: Current Innovations and Future Trends (?):
115--135.
Sambrook, J. & D.W. Russell. 2001. Molecular cloning: A laboratory manual.
3rd ed. CSHL Press, New York: xxvii + 18.136 + A.14.1+ R.22 + I.44
hlm.
Saunders, J.A., S. Mischke, & A.A. Hemeida. 2001. The use of AFLP
techniques for DNA fingerprinting in plants. Beckman Coulter, Inc.,
Fullerton: 9 hlm.
Seidman, L.A. & C.J. Moore. 1999. Basic laboratory methods for
biotechnology textbook and laboratory reference. Prentice Hall, New
Jersey: x + 751 hlm.
Shintawaty, A. 2006. The prospect of biodiesel and bioethanol development
as the alternative fuel in Indonesia. Economic Review 203: 1--8.
Struhl, K. 1993. Enzymatic manipulation of DNA and RNA. Dalam: Ausubel,
F.M., R. Brent, R.E. Kingston, D.D Moore, J.G. Seidman, J.A. Smith &
K. Struhl. 1995. Current protocol in molecular biology. Vol I. John Wiley
& Sons, Inc., (?): xxiv + 9.17.3 hlm.
Vergara, G.V. & S.S. Bughrara. 2003. AFLP analyses of genetic diversity in
bentgrass. Crop Science 43: 2162--2171.
Karakterisasi Variasi..., Andreas Agustian, FMIPA UI, 2008
57
Vos, P., R. Hogers, M. Bleeker, M. Reijans, L. Theo van de, M. Hornes, A.
Freijters, J. Pot, J. Peleman, M. Kuiper, & M. Zabeau. 1995. AFLP: A
new technique for DNA fingerprinting. Nucleic Acids Research 23:
4407--4414.
Wang, Z.S., A.J. Baker, G.E. Hill, & S.V. Edwards. 2003. Reconciling actual
and inferred population histories in the house finch (Carpodacus
mexicanus) by AFLP analysis. Evolution 57(12): 2852--2864.
Weaver, R.F. & P.W. Hedrick. 1997. Genetics. 3th ed. Wm.C.Brown
Publisher, Dubuque: xvii + 638 hlm.
Weising,K., H. Nybom, K. Wolff, & W. Meyer. 1995. DNA fingerprinting in
plants and fungi. CRC Press, Boca Raton: 322 hlm.
Wong, D.W.S. 1997. The ABCs gene cloning. The International Thomson
Publishing, New York: xiv + 213 hlm.
Karakterisasi Variasi..., Andreas Agustian, FMIPA UI, 2008